CHEBI:16015
ChEBI
439161
PubChem-compound
C00430
KEGG Compound
Glycine--tRNA ligase
L-Arginine
CHEBI:30314
ChEBI
Ammonia
439153
PubChem-compound
57
ChemSpider
50
ChemSpider
CHEBI:20506
ChEBI
53481912
PubChem-compound
CHEBI:17115
ChEBI
CHEBI:16027
ChEBI
Sarcosine
6137
PubChem-compound
Glycine N-methyltransferase
559142
ChemSpider
P09622
UniProt
CHEBI:15380
ChEBI
5742
ChemSpider
NADH
C25H40N7O19P3S
Succinyl-CoA
867.1312
C00213
KEGG Compound
CHEBI:17561
ChEBI
439175
PubChem-compound
L-CYSTATHIONINE
BioCyc
Amine oxidase [flavin-containing] A
5736
ChemSpider
C3H5O7P
Phosphohydroxypyruvic acid
183.9773
5735
ChemSpider
CHEBI:16240
ChEBI
PW000152
PathWhiz
SMILES
CC(C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N)[C@@H](O)C(=O)NCCC(=O)NCCS
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial
Glycerate kinase
Serine hydroxymethyltransferase, cytosolic
C03508
KEGG Compound
SMILES
CC(C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N)C(O)C(=O)NCCC(=O)NCCSC(=O)CCC(O)=O
1.0
3913-50-6
CAS
SMP0000721
SMPDB
979-92-0
CAS
1.0
Dimethylglycine
Serine racemase
1.0
1.0
C00009
KEGG Compound
C00008
KEGG Compound
C00007
KEGG Compound
CHEBI:17158
ChEBI
C00001
KEGG Compound
439194
PubChem-compound
L-ALPHA-ALANINE
BioCyc
SMILES
OC(=O)C(=O)COP(O)(O)=O
56-41-7
CAS
C00004
KEGG Compound
C00003
KEGG Compound
135-16-0
CAS
1.0
2-OXOBUTANOATE
BioCyc
C00002
KEGG Compound
Cystathionine gamma-lyase
Coenzyme A
1.0
Mitochondrial Inner Membrane
C00019
KEGG Compound
Oxygen
352-97-6
CAS
1.0
1.0
1.0
C00011
KEGG Compound
C00010
KEGG Compound
C00258
KEGG Compound
C00014
KEGG Compound
C01103
KEGG Compound
C00013
KEGG Compound
1.0
6112
PubChem-compound
C00022
KEGG Compound
C00021
KEGG Compound
56-65-5
CAS
MET
BioCyc
53-84-9
CAS
C00020
KEGG Compound
C00027
KEGG Compound
L-Glutamic acid
C00026
KEGG Compound
C00025
KEGG Compound
C00024
KEGG Compound
SMILES
NCSCCC(S)CCCCC(O)=O
3432-99-3
CAS
Glycyl-tRNA
298-12-4
CAS
1118-68-9
CAS
Carbon dioxide
Q9UL12
UniProt
Serine--pyruvate aminotransferase
D-3-phosphoglycerate dehydrogenase
52-90-4
CAS
760
PubChem-compound
C00037
KEGG Compound
653
ChemSpider
HMDB0003406
HMDB
C00041
KEGG Compound
HMDB0000139
HMDB
1.0
SMILES
OP(O)(=O)OP(O)(O)=O
408
ChemSpider
CHEBI:18047
ChEBI
C00048
KEGG Compound
107-97-1
CAS
Orotidylic acid
SMILES
NC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O
L-serine dehydratase/L-threonine deaminase
SMILES
N[C@@H](COP(O)(O)=O)C(O)=O
SMILES
CNCC(O)=O
Phosphoserine aminotransferase
604-98-8
CAS
HMDB0000148
HMDB
1.0
CHEBI:29162
ChEBI
L-Seryl-tRNA(Ser)
Glycyl-tRNA
L-Seryl-tRNA
Glycyl-tRNA(Gly)
4.4.1.1
false
4.4.1.1
L-Cystathionine + Water → 2-Ketobutyric acid + Ammonia + L-Cysteine
LEFT_TO_RIGHT
784
PubChem-compound
Reaction815
false
Homocysteine + L-Serine → L-Cystathionine + Water
LEFT_TO_RIGHT
C3H7O7P
3-Phosphoglyceric acid
185.99294
HMDB0001487
HMDB
SMILES
N[C@@H](CCCNC(N)=N)C(O)=O
GLYOX
BioCyc
C00062
KEGG Compound
Pyruvic acid
1.0
C5H9NO3
5-Aminolevulinic acid
131.05824
5,10-Methylene-THF
CHEBI:29156
ChEBI
5907
ChemSpider
1.0
C10H16N5O13P3
Adenosine triphosphate
506.99576
C00067
KEGG Compound
C00065
KEGG Compound
1.0
NAD
Pyrophosphate
SMILES
CC(=O)C(O)=O
ReactionCatalysis1513
ACTIVATION
ReactionCatalysis1515
ACTIVATION
C00073
KEGG Compound
ReactionCatalysis1514
ACTIVATION
ReactionCatalysis1516
ACTIVATION
HMDB0000161
HMDB
P50440
UniProt
3-Phosphoglyceric acid
SubPathwayOutput
962
PubChem-compound
DIMETHYL-GLYCINE
BioCyc
31983
ChemSpider
724
PubChem-compound
964
PubChem-compound
Serine--pyruvate aminotransferase
CO2
Carbon dioxide
43.98983
857
ChemSpider
HMDB0001024
HMDB
SMILES
O=O
BETAINE
BioCyc
Glycine dehydrogenase [decarboxylating], mitochondrial
HMDB0002111
HMDB
HMDB0001022
HMDB
SubPathwayInteraction621
SubPathway621Reaction
SubPathwayReaction
Glycerate kinase
1.0
14265-44-2
CAS
SubPathwayInteraction624
SubPathwayReaction
SubPathway624Reaction
PYRUVATE
BioCyc
712
PubChem-compound
CHEBI:15811
ChEBI
SubPathwayInteraction623
SubPathwayReaction
SubPathway623Reaction
SubPathwayInteraction629
SubPathway629Reaction
SubPathwayReaction
Cystathionine gamma-lyase
C00091
KEGG Compound
G3P
BioCyc
C4H6O3
2-Ketobutyric acid
102.03169
HMDB0000187
HMDB
1.0
644102
PubChem-compound
C3H7NO2S
L-Cysteine
121.01975
C00097
KEGG Compound
1.0
1.0
SMILES
OCC(=O)C(O)=O
H2O2
Hydrogen peroxide
34.005478
6-S-ACETYL-DIHYDROLIPOATE
BioCyc
Glycine
NADH
BioCyc
HMDB0002134
HMDB
CREATINE
BioCyc
Pyruvaldehyde
1.0
977
PubChem-compound
Sarcosine dehydrogenase, mitochondrial
1.0
50-00-0
CAS
1.0
Glycine--tRNA ligase
Acetyl-CoA
C02291
KEGG Compound
820-11-1
CAS
1.0
30572
ChemSpider
SMILES
N[C@@H](CS)C(O)=O
C05330
KEGG Compound
C8H14O2S2
(R)-lipoic acid
206.04352
SMILES
OO
H3N
Ammonia
17.026548
1.0
C10H14N5O7P
Adenosine monophosphate
347.06308
C5H11NO2
βine
117.07898
4.0
1.0
1.0
HMDB0000538
HMDB
1.0
Phosphoserine phosphatase
Serines
BioCyc
6816
PubChem-compound
1.0
51
PubChem-compound
242
ChemSpider
CHEBI:17906
ChEBI
C4H9N3O2
Creatine
131.06947
58
PubChem-compound
49791978
PubChem-compound
L-Cystathionine
C16241
KEGG Compound
CH2O
Formaldehyde
30.010565
274
ChemSpider
P23378
UniProt
137
PubChem-compound
141140
ChemSpider
Q14353
UniProt
485-80-3
CAS
H3O4P
Phosphate
97.9769
L-2-Amino-3-oxobutanoic acid
SER
BioCyc
1.0
Serine--tRNA ligase, cytoplasmic
SubPathwayInteraction609
SubPathwayReaction
SubPathway609Reaction
Q9Y617
UniProt
Amine oxidase [flavin-containing] A
AMINO-ACETONE
BioCyc
1.0
CPD-6641
BioCyc
L-Seryl-tRNA
217
ChemSpider
58-68-4
CAS
HMDB0000574
HMDB
1.0
Dimethylglycine dehydrogenase, mitochondrial
SMP0000040
SMPDB
HMDB0001423
HMDB
SMILES
OP(O)(O)=O
210
ChemSpider
(R)-lipoic acid
SMILES
C=O
HMDB0001426
HMDB
692
ChemSpider
CHEBI:30915
ChEBI
HMDB0013639
HMDB
C2H5NO2
Glycine
75.03203
C2H2O3
Glyoxylic acid
74.0004
298-08-8
CAS
2.0
HMDB0001429
HMDB
C3H7N3O2
Guanidoacetic acid
117.053825
1.0
GO:0005759
GENE ONTOLOGY
C20H23N7O6
5,10-Methylene-THF
457.171
1.0
Dimethylglycine
Gluconeogenesis
SubPathway
105
PubChem-compound
586
PubChem-compound
O43175
UniProt
Oxoglutaric acid
SMILES
O=C=O
5950
PubChem-compound
5951
PubChem-compound
Homocysteine
2.0
SMP0000060
SMPDB
C21H29N7O14P2
NADH
665.12476
2.0
P21397
UniProt
Glycine amidinotransferase, mitochondrial
HMDB0001206
HMDB
5957
PubChem-compound
GO:0005743
GENE ONTOLOGY
GO:0005741
GENE ONTOLOGY
CHEBI:16842
ChEBI
HMDB0000119
HMDB
3-P-HYDROXYPYRUVATE
BioCyc
HMDB0000123
HMDB
GO:0005739
GENE ONTOLOGY
1.0
GO:0005737
GENE ONTOLOGY
SMILES
CCC(=O)C(O)=O
HMDB0000128
HMDB
C7H14N2O4S
L-Cystathionine
222.06743
HMDB0001451
HMDB
C4H9NO2
Dimethylglycine
103.06333
OROTIDINE-5-PHOSPHATE
BioCyc
CHEBI:16891
ChEBI
389046
ChemSpider
5682
ChemSpider
5,10-Methylene-THF
METHYL-GLYOXAL
BioCyc
1.4.3.4
false
1.4.3.4
Aminoacetone + Oxygen + Water → Ammonia + Hydrogen peroxide + Pyruvaldehyde
LEFT_TO_RIGHT
C00719
KEGG Compound
Glyoxylic acid
Mitochondrial Matrix
Formaldehyde
1.0
14000-31-8
CAS
L-2-Amino-3-oxobutanoic acid
PW000698
PathWhiz
CO-A
BioCyc
P05091
UniProt
Guanidinoacetate N-methyltransferase
72-89-9
CAS
CHEBI:17750
ChEBI
HMDB0000939
HMDB
1.0
C8H16O2S2
Dihydrolipoate
208.05917
1.0
SMP0000013
SMPDB
Q8IVS8
UniProt
6557
ChemSpider
CHEBI:17724
ChEBI
106-60-5
CAS
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial
2.3.1.29
false
2.3.1.29
Acetyl-CoA + Glycine → Coenzyme A + L-2-Amino-3-oxobutanoic acid
LEFT_TO_RIGHT
127-17-3
CAS
C3H6O4
Glyceric acid
106.02661
CHEBI:30933
ChEBI
28782
PubChem-compound
Hydrogen peroxide
1.4.4.2
false
1.4.4.2
(R)-lipoic acid + Glycine → 8-[(Aminomethyl)sulfanyl]-6-sulfanyloctanoic acid + Carbon dioxide
LEFT_TO_RIGHT
312-84-5
CAS
Q14749
UniProt
1.5.8.3
false
1.5.8.3
Sarcosine + Water → Formaldehyde + Glycine
LEFT_TO_RIGHT
C5H9NO4
L-Glutamic acid
147.05316
Water
1.5.8.4
false
1.5.8.4
Dimethylglycine + Water → Formaldehyde + Sarcosine
LEFT_TO_RIGHT
33032
PubChem-compound
CHEBI:16643
ChEBI
1.0
Dihydrolipoyl dehydrogenase, mitochondrial
P34897
UniProt
Reaction1429
false
L-2-Amino-3-oxobutanoic acid → Aminoacetone + Carbon dioxide
LEFT_TO_RIGHT
P34896
UniProt
Phosphoserine
C00740
KEGG Compound
7782-44-7
CAS
1.0
1.2.1.3
false
1.2.1.3
NAD + Pyruvaldehyde → NADH + Pyruvic acid + Water
LEFT_TO_RIGHT
SMP0000034
SMPDB
NADH
9606
TAXONOMY
CHEBI:17549
ChEBI
2-KETOGLUTARATE
BioCyc
392413
ChemSpider
SMILES
OC(COP(O)(O)=O)C(O)=O
388392
ChemSpider
L-Methionine
C3H4O2
Pyruvaldehyde
72.021126
SMILES
NCC(=O)CCC(O)=O
L-Seryl-tRNA(Ser)
PW000018
PathWhiz
2.1.2.1
false
2.1.2.1
5,10-Methylene-THF + Glycine + Water ↔ L-Serine + Tetrahydrofolic acid
REVERSIBLE
CHEBI:15377
ChEBI
L-Cysteine
SubPathwayInput
CHEBI:15379
ChEBI
CHEBI:16467
ChEBI
56-45-1
CAS
SMILES
NC1=NC=NC2=C1N=CN2[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O
Glycine dehydrogenase [decarboxylating], mitochondrial
1.0
Serine hydroxymethyltransferase, cytosolic
HMDB0000742
HMDB
Dimethylglycine dehydrogenase, mitochondrial
AMINO-OXOBUT
BioCyc
ReactionCatalysis1498
ACTIVATION
2.1.2.10
false
2.1.2.10
8-[(Aminomethyl)sulfanyl]-6-sulfanyloctanoic acid + Tetrahydrofolic acid → 5,10-Methylene-THF + Ammonia + Dihydrolipoate
LEFT_TO_RIGHT
5-aminolevulinate synthase, nonspecific, mitochondrial
O75600
UniProt
3-METHYLBENZYLSUCCINYL-COA
BioCyc
C00546
KEGG Compound
74-79-3
CAS
HMDB0001846
HMDB
1.0
CHEBI:16680
ChEBI
HMDB0000517
HMDB
CHEBI:15351
ChEBI
8-[(Aminomethyl)sulfanyl]-6-sulfanyloctanoic acid
C00300
KEGG Compound
85-61-0
CAS
1.0
Dihydrolipoate
P21549
UniProt
454-29-5
CAS
C01888
KEGG Compound
7722-84-1
CAS
6022
PubChem-compound
C23H38N7O17P3S
Acetyl-CoA
809.1258
939
ChemSpider
L-Serine
937
ChemSpider
CYS
BioCyc
Aminomethyltransferase, mitochondrial
CHEBI:16134
ChEBI
HMDB0003125
HMDB
HMDB0000092
HMDB
HMDB0001185
HMDB
HMDB0000099
HMDB
PW000054
PathWhiz
CHEBI:17230
ChEBI
ATP
BioCyc
18714427
ChemSpider
3-Phosphoglycerate Dehydrogenase Deficiency
4.0
Tetrahydrofolic acid
Glycine dehydrogenase [decarboxylating], mitochondrial
Tetrahydrofolic acid
388334
ChemSpider
C15H23N6O5S
S-Adenosylmethionine
399.14505
1.0
952
ChemSpider
Aldehyde dehydrogenase, mitochondrial
107-43-7
CAS
Q9UI17
UniProt
ARG
BioCyc
5858
ChemSpider
Adenosine monophosphate
Carbon dioxide
C00109
KEGG Compound
METHYLENE-THF
BioCyc
C00581
KEGG Compound
704
ChemSpider
Aminoacetone
1.0
C00101
KEGG Compound
SMILES
OC(=O)CCCCC(S)CCS
440033
PubChem-compound
PPI
BioCyc
160617
PubChem-compound
5-aminolevulinate synthase, nonspecific, mitochondrial
FORMALDEHYDE
BioCyc
1.0
5886
ChemSpider
SMILES
C[S+](CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=NC2=C1N=CN=C2N
Cytosol
C00597
KEGG Compound
C14H20N6O5S
S-Adenosylhomocysteine
384.12158
SARCOSINE
BioCyc
1.0
1.0
Hydroxypyruvic acid
CHEBI:18361
ChEBI
NADH
CHEBI:18367
ChEBI
1032
ChemSpider
1031
ChemSpider
388320
ChemSpider
P13196
UniProt
Cystathionine gamma-lyase
1.0
SMILES
CC(=O)C=O
Pyruvic acid
SubPathwayInput
C21H27N7O14P2
NAD
663.10913
CHEBI:17482
ChEBI
Adenosine triphosphate
HMDB0000902
HMDB
Succinyl-CoA
HMDB0006454
HMDB
1.0
388301
ChemSpider
1057
ChemSpider
388307
ChemSpider
C00143
KEGG Compound
56-88-2
CAS
5653
ChemSpider
Pyruvaldehyde
57689797
PubChem-compound
Guanidoacetic acid
C5H11NO2S
L-Methionine
149.05106
2.0
C3H7NO3
D-Serine
105.042595
C01005
KEGG Compound
880
PubChem-compound
SMILES
NC(=O)C1=CN(C=CC1)[C@@H]1O[C@H](CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N2C=NC3=C(N)N=CN=C23)[C@@H](O)[C@H]1O
328-50-7
CAS
AMP
BioCyc
GUANIDOACETIC_ACID
BioCyc
1.0
HYDROGEN-PEROXIDE
BioCyc
Glycine amidinotransferase, mitochondrial
HMDB0000250
HMDB
HMDB0001341
HMDB
P49591
UniProt
LIPOIC-ACID
BioCyc
Phosphoserine phosphatase
C00168
KEGG Compound
763
ChemSpider
SMILES
N[C@@H](CCSC[C@H](N)C(O)=O)C(O)=O
(R)-lipoic acid
SMILES
CN(C)CC(O)=O
1.0
HMDB0001352
HMDB
1.0
421
PubChem-compound
78-98-8
CAS
Ammonia
P32929
UniProt
7732-18-5
CAS
C01026
KEGG Compound
Glycine amidinotransferase, mitochondrial
NAD
61-19-8
CAS
SMILES
NC1=C2N=CN([C@@H]3O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]3O)C2=NC=N1
SMILES
OC(=O)CCCC[C@@H]1CCSS1
SMILES
C[N+](C)(C)CC([O-])=O
Glycyl-tRNA(Gly)
AMMONIA
BioCyc
SMILES
N
56-86-0
CAS
63-68-3
CAS
HMDB0000271
HMDB
HMDB0000272
HMDB
NAD
56-40-6
CAS
1.0
Sarcosine
HMDB0001377
HMDB
S-Adenosylhomocysteine
HMDB0000045
HMDB
2.0
1.0
1.0
CHEBI:17050
ChEBI
SMILES
CN(CC(O)=O)C(N)=N
HMDB0000043
HMDB
2.0
C3H7NO2
L-Alanine
89.047676
5800
ChemSpider
C3H7NO
Aminoacetone
73.052765
D-3-phosphoglycerate dehydrogenase
730
ChemSpider
Water
HMDB0001149
HMDB
Aldehyde dehydrogenase, mitochondrial
SMILES
OC[C@@H](O)C(O)=O
HMDB0000051
HMDB
Phosphoserine aminotransferase
SMILES
N[C@@H](CCC(O)=O)C(O)=O
βine
C4H9NO2S
Homocysteine
135.0354
C02147
KEGG Compound
58-64-0
CAS
C03232
KEGG Compound
1.0
L-serine dehydratase/L-threonine deaminase
Q9GZT4
UniProt
HOMO-CYS
BioCyc
1.0
C3H7NO3
L-Serine
105.042595
HMDB0000064
HMDB
Aldehyde dehydrogenase, mitochondrial
444493
PubChem-compound
57-00-1
CAS
6083
PubChem-compound
C4H7NO3
L-2-Amino-3-oxobutanoic acid
117.042595
2-PG
BioCyc
757
ChemSpider
HMDB0001167
HMDB
25246222
PubChem-compound
Glycine
SMILES
OC(=O)C=O
ACETYL-COA
BioCyc
H2O
Water
18.010565
Dihydrolipoyl dehydrogenase, mitochondrial
SMILES
NCC(O)=O
NAD
BioCyc
Guanidinoacetate N-methyltransferase
743
ChemSpider
5-AMINO-LEVULINATE
BioCyc
3-P-SERINE
BioCyc
Aminomethyltransferase, mitochondrial
740
ChemSpider
SMILES
[H][C@@]12CN(CN1C1=C(NC2)N=C(N)NC1=O)C1=CC=C(C=C1)C(=O)NC(CCC(O)=O)C(O)=O
Aminoacetone
SMILES
NC(=N)NCC(O)=O
247
PubChem-compound
2149-82-8
CAS
CHEBI:15842
ChEBI
1.0
5-Aminolevulinic acid
SMILES
CC(=O)[C@H](N)C(O)=O
Sphingolipid Metabolism
SubPathway
1.0
1.0
134
ChemSpider
SMILES
O
C6H14N4O2
L-Arginine
174.11168
D-Serine
473-81-4
CAS
CHEBI:15611
ChEBI
62-46-4
CAS
64231
ChemSpider
Glycolysis
SubPathway
2-Ketobutyric acid
CHEBI:15846
ChEBI
ADP
BioCyc
C3H4O3
Pyruvic acid
88.016045
Glycine
Glycine N-methyltransferase
SMILES
N[C@H](CO)C(O)=O
SMILES
CSCC[C@H](N)C(O)=O
GO:0005829
GENE ONTOLOGY
C19H23N7O6
Tetrahydrofolic acid
445.171
C5H6O5
Oxoglutaric acid
146.02153
CHEBI:16908
ChEBI
Ammonia
ADENOSYL-HOMO-CYS
BioCyc
Reaction669
false
Homocysteine + βine → Dimethylglycine + L-Methionine
LEFT_TO_RIGHT
Serine hydroxymethyltransferase, cytosolic
CHEBI:32398
ChEBI
Sarcosine dehydrogenase, mitochondrial
Serine hydroxymethyltransferase, mitochondrial
5862
PubChem-compound
Serine--pyruvate aminotransferase
1.0
HMDB0001533
HMDB
1.0
62074
ChemSpider
600-18-0
CAS
Pyruvate Metabolism
SubPathway
C10H13N2O11P
Orotidylic acid
368.0257
Mitochondrion
THF
BioCyc
Phosphohydroxypyruvic acid
CHEBI:16919
ChEBI
GLY
BioCyc
CHEBI:16977
ChEBI
Guanidoacetic acid
HMDB0000208
HMDB
ReactionCatalysis1518
ACTIVATION
Glyceric acid
SMILES
NC1=NC(=O)C2=C(NC[C@H](CNC3=CC=C(C=C3)C(=O)NC(CCC(O)=O)C(O)=O)N2)N1
ReactionCatalysis1522
ACTIVATION
ReactionCatalysis1521
ACTIVATION
ReactionCatalysis1524
ACTIVATION
C3H4O4
Hydroxypyruvic acid
104.010956
ReactionCatalysis1523
ACTIVATION
HMDB0000696
HMDB
ReactionCatalysis1526
ACTIVATION
ReactionCatalysis1525
ACTIVATION
SMILES
OC(=O)CCC(=O)C(O)=O
ReactionCatalysis1528
ACTIVATION
ReactionCatalysis1527
ACTIVATION
124-38-9
CAS
L-Alanine
ReactionCatalysis1520
ACTIVATION
CHEBI:15414
ChEBI
6857549
PubChem-compound
HMDB0000218
HMDB
ReactionCatalysis1529
ACTIVATION
1.0
673
PubChem-compound
566
ChemSpider
1.0
5257127
PubChem-compound
1113-60-6
CAS
SMILES
O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(O)(O)=O)N1C(=O)NC(=O)C=C1C(O)=O
7664-41-7
CAS
1.0
GLT
BioCyc
L-serine dehydratase/L-threonine deaminase
Serine hydroxymethyltransferase, mitochondrial
1.0
Serine racemase
462-20-4
CAS
1.8.1.4
false
1.8.1.4
Dihydrolipoate + NAD → (R)-lipoic acid + NADH
LEFT_TO_RIGHT
S-ADENOSYLMETHIONINE
BioCyc
SMILES
C[C@H](N)C(O)=O
SMILES
CC(=O)CN
222
PubChem-compound
HMDB0012210
HMDB
1.0
H4O7P2
Pyrophosphate
177.94322
OH-PYR
BioCyc
6082
ChemSpider
Creatine
SMILES
N[C@@H](CCS)C(O)=O
Glycine--tRNA ligase
Cysteine Metabolism
SubPathway
215
PubChem-compound
CHEBI:15636
ChEBI
HMDB0000243
HMDB
SMILES
N[C@@H](CO)C(O)=O
1.0
103
ChemSpider
Adenosine triphosphate
P48728
UniProt
1.0
C10H15N5O10P2
Adenosine diphosphate
427.02942
1.0
HMDB0000005
HMDB
1.0
C3H8NO6P
Phosphoserine
185.00893
1.0
C3H7NO2
Sarcosine
89.047676
Mitochondrial Outer Membrane
SMP0000128
SMPDB
ReactionCatalysis1160
ACTIVATION
1.0
1.0
4.0
SMILES
NC(=O)C1=C[N+](=CC=C1)[C@@H]1O[C@H](COP([O-])(=O)OP(O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N2C=NC3=C2N=CN=C3N)[C@@H](O)[C@H]1O
CPD-8587
BioCyc
HMDB0000807
HMDB
CHEBI:30831
ChEBI
Reaction1770
false
Glycine + Pyruvic acid ↔ Glyoxylic acid + L-Alanine
REVERSIBLE
CHEBI:1146900
ChEBI
2.3.1.37
false
2.3.1.37
Glycine + Succinyl-CoA → 5-Aminolevulinic acid + Coenzyme A
LEFT_TO_RIGHT
2.1.1.2
false
2.1.1.2
Guanidoacetic acid + S-Adenosylhomocysteine → Creatine + S-Adenosylmethionine
LEFT_TO_RIGHT
2.1.4.1
false
2.1.4.1
Glycine + L-Arginine ↔ Guanidoacetic acid + Orotidylic acid
REVERSIBLE
P78330
UniProt
Water
Reaction1769
false
L-Serine + Pyruvic acid ↔ Hydroxypyruvic acid + L-Alanine
REVERSIBLE
1088
PubChem-compound
S-Adenosylmethionine
C21H36N7O16P3S
Coenzyme A
767.11523
Adenosine diphosphate
Cytoplasm
Serine--tRNA ligase, cytoplasmic
ReactionCatalysis1174
ACTIVATION
Glycine
CHEBI:15422
ChEBI
Coenzyme A
1.0
Homo sapiens
SMILES
CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
388299
ChemSpider
1.0
6.1.1.14
false
6.1.1.14
Adenosine triphosphate + Glycine + Glycyl-tRNA → Adenosine monophosphate + Glycyl-tRNA(Gly) + Pyrophosphate
LEFT_TO_RIGHT
Reaction1793
false
L-Serine → D-Serine
LEFT_TO_RIGHT
O2
Oxygen
31.98983
6.1.1.11
false
6.1.1.11
Adenosine triphosphate + L-Serine + L-Seryl-tRNA → Adenosine monophosphate + L-Seryl-tRNA(Ser) + Pyrophosphate
LEFT_TO_RIGHT
2.1.2.1
false
2.1.2.1
L-Serine + Tetrahydrofolic acid ↔ 5,10-Methylene-THF + Glycine + Water
REVERSIBLE
CHEBI:40673
ChEBI
CHEBI:16523
ChEBI
CHEBI:16526
ChEBI
1.0
CHEBI:16761
ChEBI
2.1.1.20
false
2.1.1.20
S-Adenosylhomocysteine + Sarcosine ↔ Glycine + S-Adenosylmethionine
REVERSIBLE
P20132
UniProt
Reaction1789
false
L-Serine ↔ Ammonia + Pyruvic acid
REVERSIBLE
CHEBI:15428
ChEBI
2.6.1.52
false
2.6.1.52
L-Glutamic acid + Phosphohydroxypyruvic acid ↔ Oxoglutaric acid + Phosphoserine
REVERSIBLE
3.1.3.3
false
3.1.3.3
Phosphoserine + Water → L-Serine + Phosphate
LEFT_TO_RIGHT
1.0
Serine--tRNA ligase, cytoplasmic
1.1.1.95
false
1.1.1.95
3-Phosphoglyceric acid + NAD ↔ NADH + Phosphohydroxypyruvic acid
REVERSIBLE
2.7.1.31
false
2.7.1.31
Adenosine triphosphate + Glyceric acid ↔ 3-Phosphoglyceric acid + Adenosine diphosphate
REVERSIBLE
PW000148
PathWhiz
PW000146
PathWhiz
5893
PubChem-compound
1.0
1.0
Dihydrolipoate
1.0
CHEBI:32816
ChEBI
L-Serine
SubPathwayInput
1.0
CHEBI:16344
ChEBI
1.0
Phosphate
280
PubChem-compound
C9H19NO2S2
8-[(Aminomethyl)sulfanyl]-6-sulfanyloctanoic acid
237.08572
L-Serine
ReactionCatalysis1135
ACTIVATION
25243997
PubChem-compound
SMILES
N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=NC2=C1N=CN=C2N)C(O)=O
ReactionCatalysis1149
ACTIVATION
407-41-0
CAS
ReactionCatalysis1146
ACTIVATION
3946848
PubChem-compound
1060
PubChem-compound
1061
PubChem-compound
ReactionCatalysis363
ACTIVATION
HMDB0001967
HMDB
P41250
UniProt
24762165
PubChem-compound
CHEBI:30841
ChEBI
ReactionCatalysis1151
ACTIVATION
13781857
PubChem-compound
ReactionCatalysis1153
ACTIVATION
ReactionCatalysis1157
ACTIVATION